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PLASMID MINI-PREP (ISOLATION)

TENS Buffer:

10 mM Tris-HCl pH 8.0
1 mM EDTA
100mM NaOH
0.5% SDS

 

  1. Pick a colony with a sterile toothpick or use 30µl of a liquid culture and inoculate 3.0ml of LB + 3ul AMP stock (75 mg/ml) in a sterile culture tube.
  2. Let grow at 37oC overnight, shaking vigorously.
  3. Centrifuge 1.5ml of liquid culture for 10 sec at room temperature in a sterile 1.5 ml tube. Never use all of the liquid culture if this is a new clone. Store the excess at 4oC for future use.
  4. Remove all but ~60ul of supernatant and vortex well to re-suspend.
    DO STEPS 5 &6 AS quickly AS POSSIBLE. If doing more than 5-6 samples at one time, keep on ice.
  5. Add 300ul TENS buffer and vortex 2-5 seconds or until sticky. (Keep samples on ice)
  6. Add 150ul of 3M sodium acetate (pH 5.2) and vortex 2-5 seconds.
  7. Immediately centrifuge at room temperature, 14,000 RPM for 10 minutes.
  8. Transfer supernatant to a clean tube.
  9. Add 1/2 volume of phenol and 1/2 volume of chloroform, vortex and centrifuge for 5 minutes at room temperature. Transfer the aqueous layer (top) to a new tube and discard the bottom layer (organic).
  10. Repeat Step 9 one or two more times.
  11. Add 1 volume of chloroform to aqueous layer, vortex, and centrifuge as above. Remove top layer as above.
  12. Add 900ul of cold 100% EtOH and store at -20oC for 8 hours to overnight or at -80oC for 15 minutes (-80oC method tends to cause a decrease in yield).
  13. Centrifuge at 14,000 RPM at 4oC for 15 minutes.
  14. Remove supernatant and add 200-500ul of cold 70% EtOH.
  15. Centrifuge as above for 2 minutes.
  16. CAREFULLY remove supernatant (pop spin if necessary) and let pellet air dry.
  17. Re-suspend pellet in sterile nH2O; use 25-50 µl, depending on the size of the pellet.
  18. Check quantity and quality of plasmid DNA on a gel (run 1-2 µl).

 

Digestion of Plasmid DNA

After checking the quality of your DNA set up a single and double digestion. You should only need about 5 µl of your plasmid DNA for each digestion but check this with the instructor before setting up the digestion reactions. For the common mutant use Sac II for the single digest and Sac II + Pst I for the double digest. Remember when setting up the double digest that you must check the compatibility of the buffers.