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Chromosomal DNA Preparation Homogenization Buffer 1. Homogenize 50-100 fresh/frozen flies or embryos in a tissue grinder with 1.0 - 1.5ml homogenization buffer. Divide the homogenate into two 1.5ml microcentrifuge tubes. 2. Add 5µl of RNAse A (10mg/ml) and mix by inverting the tube several times. Incubate at 65o C for 30 minutes. 3. Add 5µl of Proteinase K (10mg/ml) and mix by inverting the tube several times. Incubate at 55oC for 30 minutes. 4. Add 75µl of 8M Potassium acetate. Place on ice for 45 minutes. 5. Centrifuge at 14,000 RPM at 4oC for 10-15 minutes. 6. Transfer supernatant to a clean 1.5ml microcentrifuge tube making sure to AVOID THE PELLET. 7. Add 1/2 volume of saturated phenol and 1/2 volume of chloroform. Mix by inverting the tube several times. DO NOT VORTEX. 8. Centrifuge at 14,000 RPM & room temperature for 5 minutes. 9. Move the aqueous (top) layer to a clean tube and discard the bottom layer. 10. Repeat steps 7-9 two additional times or until no protein is left at interface. 11. Add 1 volume of chloroform, spin down and remove the supernatant as above. 12. Add 1000 µl of cold 100% ethanol to each tube, mix and place at -20oC for 8 hours (or -80oC for 15 minutes if DNA is needed immediately). 13. Centrifuge for 10-15 minutes at 4oC and remove supernatant making sure not to disturb pellet. 14. Add 200-500 µl of cold 70% ethanol and spin as above for 2-5 minutes. 15. Remove as much of the ethanol as possible. 16. Let pellet air dry, then re-suspend in 25-50 µl of sterile nH20. 17. Combine samples and store at -20oC |